sct_get_sequence - Convert Fasta or PDB File to YAML Residue Frequency File

Convert fasta or pdb file to yaml residue frequency file.

Useage:

Run using the command:

sct_get_sequence.py [-h] -i [INPUT_FILENAME] [-p]
                           [-o [OUTPUT_FILENAME]]

Arguments:

  -h, --help            show this help message and exit
  -i [INPUT_FILENAME], --input_filename [INPUT_FILENAME]
                        Path to the input fasta/pdb file
  -p, --pdb             Flag to indicate input is a PDB rather than fasta file
  -o [OUTPUT_FILENAME], --output_filename [OUTPUT_FILENAME]
                        Path to the output file

Notes:

Output:

A YAML file with lines of the following format

where resid Resid is a three letter residue code and frequency is the number of occurences in the input sequence.